Plant Genomics Data
Green Biome Institute
The GBI is striving to publish our draft genomic profiles in as transparent a manner as possible.
We will therefore compose a White Papers for every plant dataset created illustrating our data quality and the details of analysis methodology. These will be available shortly. If you have questions or inquiries, please contact Dr. Chris Baysdorfer.
The table below contains links to all available sequencing data we have assembled on endangered California plants to date.The first accession number link will take you to the bioproject page of Genbank and from there you can access raw datasets and other information. The second link under Calflora takes you to the appropriate CalFlora page for each plant type. The in-depth Calflora reviews of each of California's plants are a great resource for plant information. Lastly, several plants are listed as unavailable. Data for these plants exists and if you are interested in a not-yet-released plant, please reach out to our PIs in charge of the plant species. Dr. Ana Almeida is in charge of the Manzanita program. All other plants including; the Fritillaria, Scoliopus, and Prosartes programs are managed by Dr. Chris Baysdorfer. We hope you find the information useful and encourage you to reach out to us if you have any questions!
RARE PLANT GENOMIC DATA AND REPORTS
| Name |
Common |
CNPS Classification |
BioProject Assession Number |
Calflora | Data Released |
| Abronia alpina | Ramshaw meadows abronia |
1B.1 | PRJNA1085347 | link | Yes |
| Agrostis hooveri | Hoover's bent grass, Hoover's bentgrass | 1B.2 | PRJNA1083522 | link | Yes |
| Astragalus pycnostachyus var. lanosissimus |
Marsh milk vetch, Marsh milkvetch | 1B.1 | PRJNA1082787 | link | Yes |
| Baccharis plummerae ssp. glabrata |
San simeon baccharis | 1B.2 | PRJNA1083534 | link | Yes |
| Baccharis plummerae ssp. glabrata |
Encinitas baccharis | 1B.1 | PRJNA1085363 | link | Yes |
| Balsamorhiza macrolepis | Big scale balsam root, California balsamroot | 1B.2 | PRJNA1085374 | link | Yes |
| Bensoniella oregona | Bensoniella | 1B.1 | PRJNA1083610 | link | Yes |
| Berberis nevinii | Nevin's barberry | 1B.1 | PRJNA1082748 | link | Yes |
| Brodiaea filifolia | Thread leaved brodiaea, Threadleaf brodiaea | 1B.1 | PRJNA1085364 | link | Yes |
| Brodiaea orcutti | Orcutt's brodiaea | 1B.1 | PRJNA1086974 | link | Yes |
| Brodiaea pallida | Chinese camp brodiaea | 1B.1 | Processing | link | Yes |
| Calystegia purpurata ssp. saxicola |
Bodega morning glory, Pacific false bindweed | 1B.2 | PRJNA1083552 | link | Yes |
| Calystegia stebbinsii | Cutleaf morning glory, El dorado morningglory, Stebbins's morning glory | 1B.1 | PRJNA1082740 | link | Yes |
| Campanula californica | Swamp harebell | 1B.2 | PRJNA1083936 | link | Yes |
| Carex xerophila | chaparral sedge | 1B.2 | PRJNA1083609 | link | Yes |
| Castilleja hololeuca | Island white-felted paintbrush | 1B.2 | PRJNA1083550 | link | Yes |
| Castilleja mollis | Soft leaved indian paintbrush | 1B.1 | PRJNA839797 | link | Yes |
| Ceanothus confusus | Rincon ridge ceanothus | 1B.1 | PRJNA1083538 | link | Yes |
| Ceanothus divergens | Calistoga ceanothus | 1B.2 | PRJNA1083547 | link | Yes |
| Ceanothus foliosus var. vineatus |
Vine hill ceanothus | 1B.1 | PRJNA1082741 | link | Yes |
| Ceanothus hearstiorum | Hearst ranch buckbrush, Hearst's ceanothus | 1B.2 | PRJNA1083549 | link | Yes |
| Ceanothus maritimus | Maritime ceanothus, San luis obispo ceanothus | 1B.2 | PRJNA1083551 | link | Yes |
| Ceanothus roderickii | Pine hill buckbrush, Pine hill ceanothus | 1B.1 | PRJNA1082705 | link | Yes |
| Chlorogalum grandiflorum | Red hills soap plant, Red hills soaproot | 1B.2 | PRJNA1083548 | link | Yes |
| Chlorogalum purpureum var. purpureum |
Purple amole | 1B.1 | PRJNA1086981 | link | Yes |
| Clarkia imbricata | Vine hill clarkia | 1B.1 | PRJNA1082710 | link | Yes |
| Clarkia jolonensis | Jolon clarkia | 1B.2 | PRJNA1089163 | link | Yes |
| Crocanthemum greenei | Island rush-rose | 1B.2 | PRJNA1082739 | link | Yes |
| Delphinium bakeri | Baker's delphinium, Baker's larkspur | 1B.1 | PRJNA1082753 | link | Yes |
| Delphinium luteum |
Golden larkspur, Yellow larkspur | 1B.1 | PRJNA1085366 | link | Yes |
| Dirca occidentalis | Western leatherwood | 1B.2 | PRJNA1083554 | link | Yes |
| Dudleya densiflora | San gabriel mountains liveforever, San gabriel mtns. dudleya | 1B.1 | PRJNA1082320 | link | Yes |
| Dudleya gnoma | Munchkin liveforever | 1B.1 | PRJNA1083519 | link | Yes |
| Eriodictyon altissimum | Indian knob mountainbalm | 1B.1 | PRJNA1082750 | link | Yes |
| Eriogonum crocatum | Conejo buckwheat | 1B.2 | PRJNA1083555 | link | Yes |
| Eriogonum grande var. rubescens |
Red flowered buckwheat, Redflower buckwheat | 1B.2 | PRJNA1085359 | link | Yes |
| Eriogonum grande var. timorum |
San nicolas island buckwheat | 1B.1 | PRJNA1085367 | link | Yes |
| Eriogonum ovalifolium var. vineum |
Cushenbury buckwheat | 1B.1 | PRJNA1083611 | link | Yes |
| Eriogonum truncatum | Mt. Diablo buckwheat | 1B.1 | PRJNA1080902 | link | Yes |
| Erysimum concinnum |
Bluff wallflower, Headland wallflower | 1B.2 | PRJNA1085371 | link | Yes |
| Frangula purshiana ssp. ultramafica |
Caribou coffeeberry | 1B.2 | PRJNA1082711 | link | Yes |
| Fremontodendron decumbens | Pine hill flannelbush | 1B.2 | PRJNA1083556 | link | Yes |
| Galium buxifolium | Box bedstraw | 1B.2 | PRJNA1083608 | link | Yes |
| Galium californicum ssp. luciense |
Cone Peak bedstraw | 1B.3 | PRJNA1082752 | link | Yes |
| Galium californicum ssp. sierrae |
El dorado bedstraw | 1B.2 | PRJNA1083562 | link | Yes |
| Gambelia speciosa | Showy island snapdragon | 1B.2 | PRJNA1083558 | link | Yes |
| Helianthella castanea | Mt. diablo helianthella | 1B.2 | PRJNA1083563 | link | Yes |
| Heuchera brevistaminea | Laguna mountain alumroot, Mt. laguna alumroot | 1B.3 | PRJNA1082749 | link | Yes |
| Hoita strobilina | Loma Prieta hoita, Loma prieta psoralea | 1B.1 | PRJNA1082347 | link | Yes |
| Horkelia marinensis | Point reyes horkelia | 1B.2 | PRJNA1085375 | link | Yes |
| Horkelia parryi | Parry horkelia, Parry's horkelia | 1B.2 | PRJNA1083564 | link | Yes |
| Lasthenia conjugens | Contra costa goldfields | 1B.1 | PRJNA1083938 | link | Yes |
| Lavatera assurgentiflora ssp. glabra |
Southern island mallow | 1B.1 | PRJNA1082754 | link | Yes |
| Lilium maritimum | Coast lily | 1B.1 | PRJNA1086982 | link | Yes |
| Lilium pardalinum ssp. pitkinense |
Pitkin marsh lily | 1B.1 | PRJNA1086983 | link | Yes |
| Lonicera subspicata var. subspicata |
Santa Barbara honeysuckle, Southern honeysuckle | 1B.2 | PRJNA1083565 | link | Yes |
| Malacothamnus abbottii | Abbott's bushmallow | 1B.1 | PRJNA1085362 | link | Yes |
| Malacothamnus fasciculatus var. nesioticus |
Santa Cruz Island bushmallow | 1B.1 | PRJNA1085368 | link | Yes |
| Malacothrix indecora | Santa cruz island cliff aster, Santa cruz island desertdandelion, Santa cruz island malacothrix | 1B.1 | PRJNA1085365 | link | Yes |
| Munzothamnus blairii | Blair's wirelettuce | 1B.2 | PRJNA1083566 | link | Yes |
| Nolina interrat |
Dehesa beargrass, Dehesa nolina | 1B.1 | PRJNA1085369 | link | Yes |
| Oenothera wolfii | Wolf's evening primrose | 1B.1 | PRJNA1083941 | link | Yes |
| Packera layneae | Layne's ragwort | 1B.2 | PRJNA1085373 | link | Yes |
| Panicum acuminatum var. thermale |
Geysers panicum | 1B.2 | PRJNA1083567 | link | Yes |
| Pinus contorta ssp. bolanderi |
Bolander pine, Bolander's beach pine | 1B.2 | PRJNA1083568 | link | Yes |
| Polygonum hickmanii | Hickman's knotweed, Scotts Valley polygonum | 1B.1 | PRJNA1085370 | link | Yes |
| Quercus dumosa | Coastal sage scrub oak, Nuttall's scrub oak | 1B.1 | PRJNA1082751 | link | Yes |
| Rosa woodsii var. glabrata |
Woods' rose | 1B.1 | PRJNA1082345 | link | Yes |
| Sidalcea calycosa ssp. rhizomata |
Point reyes checkerbloom, Pt. reyes checkerbloom, Pt. reyes sidalcea | 1B.2 | PRJNA1085345 | link | Yes |
| Sidalcea oregana ssp. valida |
Kenwood marsh checkerbloom | 1B.1 | PRJNA1085360 | link | Yes |
| Suaeda esteroa | Estuary seablite | 1B.2 | PRJNA1082712 | link | Yes |
| Wyethia reticulata | El dorado county mule ears, El dorado mule ears, Eldorado wyethia | 1B.2 | PRJNA1085356 | link | Yes |
| Arctostaphylos auriculata | Mount Diablo manzanita | 1B.3 | PRJNA1084032 | link | No |
| Arctostaphylos bakeri ssp. bakeri |
Baker's manzanita | 1B.1 | PRJNA1082755 | link | No |
| Arctostaphylos confertiflora | Santa rosa island manzanita | 1B.2 | PRJNA1082789 | link | No |
| Arctostaphylos densiflora | Vine hill manzanita | 1B.1 | PRJNA1083942 | link | No |
| Arctostaphylos edmundsii | Little sur manzanita | 1B.2 | PRJNA1082790 | link | No |
| Arctostaphylos franciscana | Franciscan manzanita | 1B.1 | PRJNA1082758 | link | No |
| Arctostaphylos gabilanensis | Gabilan mountains manzanita | 1B.2 | PRJNA1082759 | link | No |
| Arctostaphylos glandulosa ssp. crassifolia |
Costa baja manzanita, Del mar manzanita | 1B.1 | PRJNA1082760 | link | No |
| Arctostaphylos hookeri ssp. hearstiorum |
Hearst's manzanita | 1B.2 | PRJNA1082791 | link | No |
| Arctostaphylos hookeri ssp. hookeri |
Hooker's manzanita, Monterey manzanita | 1B.2 | PRJNA1082792 | link | No |
| Arctostaphylos imbricata | San bruno mountain manzanita, San bruno mtn. manzanita | 1B.1 | PRJNA1082761 | link | No |
| Arctostaphylos manzanita ssp. laevigata |
Contra costa manzanita | 1B.2 | PRJNA1082762 | link | No |
| Arctostaphylos montana ssp. ravenii |
Presidio manzanita | 1B.1 | PRJNA1082766 | link | No |
| Arctostaphylos morroensis | Morro manzanita | 1B.1 | PRJNA1083943 | link | No |
| Arctostaphylos nummularia ssp. mendocinoensis |
Pygmy manzanita | 1B.2 | PRJNA1082779 | link | No |
| Arctostaphylos osoensis | Oso manzanita | 1B.2 | PRJNA1083523 | link | No |
| Arctostaphylos pacifica | Pacific manzanita | 1B.1 | PRJNA1082781 | link | No |
| Arctostaphylos pajaroensis | Pajaro manzanita | 1B.1 | PRJNA1082782 | link | No |
| Arctostaphylos pallida | Alameda manzanita, Oakland hills manzanita, Pallid manzanita | 1B.1 | PRJNA1082783 | link | No |
| Arctostaphylos pumila | Dune manzanita, Sandmat manzanita | 1B.2 | PRJNA1083525 | link | No |
| Arctostaphylos purissima | La purisima manzanita, La purissima manzanita | 1B.1 | PRJNA1083944 | link | No |
| Arctostaphylos rainbowensis | Rainbow manzanita | 1B.1 | PRJNA1083945 | link | No |
| Arctostaphylos rainbowensis | Kings mountain manzanita, Kings mtn. manzanita | 1B.2 | PRJNA1083946 | link | No |
| Arctostaphylos silvicola | Bonny doon manzanita, Silverleaf manzanita | 1B.2 | PRJNA1083526 | link | No |
| Arctostaphylos stanfordiana ssp. decumbens |
Rincon manzanita | 1B.1 | PRJNA1082785 | link | No |
| Arctostaphylos stanfordiana ssp. raichei |
Rincon manzanita | 1B.1 | PRJNA1082785 | link | No |
| Arctostaphylos tomentosa ssp. daciticola |
Dacite manzanita | 1B.1 | PRJNA1082786 | link | No |
| Arctostaphylos virgata | Bolinas manzanita, Marin manzanita | 1B.2 | PRJNA1083533 | link | No |
| Cercocarpus traskiae | Catalina Island Mountain Mahogany | 1B.1 | PRJNA1082338 | link | No |
| Fritillaria affinis var. tristulis |
Coast checker lily, Mission bells | 1B.1 | PRJNA1085351 | link | No |
| Fritillaria agrestis | Stinkbells | 4.2 | PRJNA1086975 | link | No |
| Fritillaria agrestis | Stinkbells | 4.2 | PRJNA1086976 | link | No |
| Fritillaria biflora | Chocolate lily | CBR | PRJNA1085352 | link | No |
| Fritillaria biflora var. ineziana |
Hillsborough chocolate lily | 1B.1 | PRJNA1086977 | link | No |
| Fritillaria falcata | Talus fritillary | 1B.2 | PRJNA1085353 | link | No |
| Fritillaria falcata | Fragrant fritillary | 1B.2 | PRJNA1086978 | link | No |
| Fritillaria liliacea | Fragrant fritillary | 1B.2 | PRJNA1086979 | link | No |
| Fritillaria liliacea | Fragrant fritillary | 1B.2 | PRJNA1086980 | link | No |
| Fritillaria pluriflora | Adobe lily | 1B.2 | PRJNA1085354 | link | No |
| Fritillaria roderickii | Roderick's fritillary | 1B.1 | PRJNA1085355 | link | No |
| Fritillaria striata | Striped adobe lily | 1B.1 | PRJNA1085361 | link | No |
| Scoliopus bigelovii | California fetid adderstongue, Fetid adder's tongue, Slink pod | S1 link |
PRJNA1085358 | link | No |
| Scoliopus hallii | Oregon Fetid Adder's Tongue | S4 link |
PRJNA1085346 | link | No |
| Prosartes parvifolia | Siskiyou bells | 1B.2 | PRJNA1085357 | link | No |
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